Running all stages

About

Path: examples/academic/all_stages.

Configuring

workflow.cfg

[cycles]
begin_date=2023-08-01
end_date=2023-08-03
round=1D
freq=1D
indep=True
as_intervals=False


[groups]
group0=gtask0,gtask1
group1=gtask2,gtask3

[stages]
dry_run=True

    [[prolog]]
    prolog0=ptask0,ptask1,group0
    prolog1=ptask2,ptask3

    [[cycles]]
    cycles0=ctask0,ctask1,group1
    cycles1=ctask2,ctask3

    [[epilog]]
    epilog0=etask0,etask1
    epilog1=etask2,etask3

tasks.cfg

# For groups
[gtask0]
    [[content]]
    commandline=echo hoho ; echo gtask0 > gtask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
[gtask1]
    [[content]]
    commandline=echo gtask1 > gtask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
[gtask2]
    [[content]]
    commandline=echo gtask2 $WOOM_CYCLE_TOKEN > gtask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
[gtask3]
    [[content]]
    commandline=echo gtask3 $WOOM_CYCLE_TOKEN > gtask3.out >> $WOOM_WORKFLOW_DIR/workflow.out

# For prolog
[ptask0]
    [[content]]
    commandline=echo ptask0 > ptask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
[ptask1]
    [[content]]
    commandline=echo ptask1 > ptask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
[ptask2]
    [[content]]
    commandline=echo ptask2 > ptask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
[ptask3]
    [[content]]
    commandline=echo ptask3 > ptask3.out >> $WOOM_WORKFLOW_DIR/workflow.out

# For cycles
[ctask0]
    [[content]]
    commandline=sleep 5 ; echo ctask0 $WOOM_CYCLE_TOKEN > ctask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
    [[submit]]
    queue=omp
[ctask1]
    [[content]]
    commandline=echo ctask1 $WOOM_CYCLE_TOKEN > ctask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
    [[submit]]
    queue=omp
[ctask2]
    [[content]]
    commandline=echo ctask2 $WOOM_CYCLE_TOKEN>  ctask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
    [[submit]]
    queue=omp
[ctask3]
    [[content]]
    commandline=echo ctask3 $WOOM_CYCLE_TOKEN > ctask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
    [[submit]]
    queue=omp


# For epilog
[etask0]
    [[content]]
    commandline=echo etask0 > etask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
[etask1]
    [[content]]
    commandline=echo etask1 > etask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
[etask2]
    [[content]]
    commandline=echo etask2 > etask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
[etask3]
    [[content]]
    commandline=sleep 5 ; echo etask3 > etask3.out >> $WOOM_WORKFLOW_DIR/workflow.out

hosts.cfg

[datarmor]
patterns=datavisu*,*.ice.ifremer.fr,datarmor*
scheduler=pbspro
module_setup=. /etc/profile.d/modules.sh

    [[queues]]
    seq=sequentiel
    omp=omp

    [[dirs]]
    scratch=$SCRATCH
    work=$DATAWORK

Running

Overview

Let’s have an overview of stages before running the workflow.

$ woom show overview
################################## TASK TREE ###################################
prolog:
    - prolog0: ptask0 // ptask1 // [gtask0 -> gtask1]
    - prolog1: ptask2 // ptask3
cycles:
    - cycles0: ctask0 // ctask1 // [gtask2 -> gtask3]
    - cycles1: ctask2 // ctask3
epilog:
    - epilog0: etask0 // etask1
    - epilog1: etask2 // etask3
#################################### CYCLES ####################################
2023-08-01T00:00:00+00:00
2023-08-02T00:00:00+00:00
2023-08-03T00:00:00+00:00
################################### ENSEMBLE ###################################
no member

Dry run

Now let’s run the workflow in test (dry) and debug modes.

$ woom run --log-no-color --log-level debug --dry-run
woom.log    : DEBUG    *** STARTED LOG SESSION ***
woom.cli    : DEBUG    Run the workflow
woom.cli    : DEBUG    Loading extensions
woom.cli    : INFO     No extension to load
woom.cli    : DEBUG    Load workflow config: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/workflow.cfg
woom.cli    : INFO     Loaded workflow config
woom.cli    : DEBUG    Initialize the host manager
woom.cli    : INFO     Initialized the host manager
woom.cli    : DEBUG    Load hosts config file: hosts.cfg
woom.cli    : INFO     Loaded hosts config file: hosts.cfg
woom.cli    : DEBUG    Infer host
woom.cli    : INFO     Infered host: local
woom.cli    : DEBUG    Initialize the task manager
woom.cli    : INFO     Initialized the task manager
woom.cli    : DEBUG    Load the task config file: tasks.cfg
woom.cli    : INFO     Loaded the task config file: tasks.cfg
woom.cli    : DEBUG    Initialize the workflow
woom.workflow: DEBUG    Task tree:
prolog:
    - prolog0: ptask0 // ptask1 // [gtask0 -> gtask1]
    - prolog1: ptask2 // ptask3
cycles:
    - cycles0: ctask0 // ctask1 // [gtask2 -> gtask3]
    - cycles1: ctask2 // ctask3
epilog:
    - epilog0: etask0 // etask1
    - epilog1: etask2 // etask3
woom.cli    : INFO     Initialized the workflow
woom.cli    : INFO     Successfully setup the workflow!
woom.cli    : DEBUG    Run the workflow
woom.workflow: DEBUG    Running the workflow in fake mode
woom.workflow: DEBUG    Entering stage: prolog
woom.workflow: DEBUG    Entering sequence: prolog0
woom.workflow: DEBUG    Running task: prolog/prolog0/ptask0
woom.job    : INFO     Started job manager: BackgroundJobManager()
woom.workflow: DEBUG    Cleaning task: prolog/prolog0/ptask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog0/ptask0
woom.workflow: DEBUG      Dependencies: 
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ptask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/ptask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/ptask0"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/ptask0 && cd /home/docs/woom/scratch/woom/prolog/ptask0

# Run the commandline(s)
echo ptask0 > ptask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog0/ptask0 with job id 704425
woom.workflow: DEBUG    Running task: prolog/prolog0/ptask1
woom.workflow: DEBUG    Cleaning task: prolog/prolog0/ptask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog0/ptask1
woom.workflow: DEBUG      Dependencies: 
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ptask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/ptask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/ptask1"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/ptask1 && cd /home/docs/woom/scratch/woom/prolog/ptask1

# Run the commandline(s)
echo ptask1 > ptask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog0/ptask1 with job id 210188
woom.workflow: DEBUG    Group of 2 sequential tasks:
woom.workflow: DEBUG    Running task: prolog/prolog0/gtask0
woom.workflow: DEBUG    Cleaning task: prolog/prolog0/gtask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog0/gtask0
woom.workflow: DEBUG      Dependencies: 
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/gtask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/gtask0"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/gtask0 && cd /home/docs/woom/scratch/woom/prolog/gtask0

# Run the commandline(s)
echo hoho ; echo gtask0 > gtask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog0/gtask0 with job id 322627
woom.workflow: DEBUG    Running task: prolog/prolog0/gtask1
woom.workflow: DEBUG    Cleaning task: prolog/prolog0/gtask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog0/gtask1
woom.workflow: DEBUG      Dependencies: 322627
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/gtask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/gtask1"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/gtask1 && cd /home/docs/woom/scratch/woom/prolog/gtask1

# Run the commandline(s)
echo gtask1 > gtask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog0/gtask1 with job id 581031 depending on [322627]
woom.workflow: DEBUG    Entering sequence: prolog1
woom.workflow: DEBUG    Running task: prolog/prolog1/ptask2
woom.workflow: DEBUG    Cleaning task: prolog/prolog1/ptask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog1/ptask2
woom.workflow: DEBUG      Dependencies: 704425, 210188, 581031
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ptask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/ptask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/ptask2"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/ptask2 && cd /home/docs/woom/scratch/woom/prolog/ptask2

# Run the commandline(s)
echo ptask2 > ptask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog1/ptask2 with job id 366325 depending on [704425, 210188, 581031]
woom.workflow: DEBUG    Running task: prolog/prolog1/ptask3
woom.workflow: DEBUG    Cleaning task: prolog/prolog1/ptask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.status
woom.workflow: DEBUG    Submitting task: prolog/prolog1/ptask3
woom.workflow: DEBUG      Dependencies: 704425, 210188, 581031
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ptask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/prolog/ptask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="prolog/ptask3"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/prolog/ptask3 && cd /home/docs/woom/scratch/woom/prolog/ptask3

# Run the commandline(s)
echo ptask3 > ptask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: prolog/prolog1/ptask3 with job id 311522 depending on [704425, 210188, 581031]
woom.workflow: INFO     Successfully submitted stage: prolog
woom.workflow: DEBUG    Entering stage: cycles
woom.workflow: INFO     Cycling on independant dates from 2023-08-01 00:00:00+00:00 to 2023-08-03 00:00:00+00:00 in 3 time(s)
woom.workflow: DEBUG    Running cycle: 2023-08-01T00:00:00+00:00
woom.workflow: DEBUG    Entering sequence: cycles0
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask0
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/ctask0"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask0 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask0

# Run the commandline(s)
sleep 5 ; echo ctask0 $WOOM_CYCLE_TOKEN > ctask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 893370 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask1
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/ctask1"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask1 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask1

# Run the commandline(s)
echo ctask1 $WOOM_CYCLE_TOKEN > ctask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 582278 depending on [366325, 311522]
woom.workflow: DEBUG    Group of 2 sequential tasks:
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask2
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/gtask2"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask2 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask2

# Run the commandline(s)
echo gtask2 $WOOM_CYCLE_TOKEN > gtask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 874084 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask3
woom.workflow: DEBUG      Dependencies: 874084
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/gtask3"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask3 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask3

# Run the commandline(s)
echo gtask3 $WOOM_CYCLE_TOKEN > gtask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 234299 depending on [874084]
woom.workflow: DEBUG    Entering sequence: cycles1
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask2
woom.workflow: DEBUG      Dependencies: 893370, 582278, 234299
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/ctask2"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask2 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask2

# Run the commandline(s)
echo ctask2 $WOOM_CYCLE_TOKEN>  ctask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 116478 depending on [893370, 582278, 234299]
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask3
woom.workflow: DEBUG      Dependencies: 893370, 582278, 234299
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-01T00:00:00+00:00/ctask3"
export WOOM_CYCLE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="1"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV=""
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="0"
export WOOM_CYCLE_NEXT_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_NEXT="2023-08-01T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask3 && cd /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask3

# Run the commandline(s)
echo ctask3 $WOOM_CYCLE_TOKEN > ctask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 714119 depending on [893370, 582278, 234299]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-01T00:00:00+00:00
woom.workflow: DEBUG    Running cycle: 2023-08-02T00:00:00+00:00
woom.workflow: DEBUG    Entering sequence: cycles0
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask0
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/ctask0"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask0 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask0

# Run the commandline(s)
sleep 5 ; echo ctask0 $WOOM_CYCLE_TOKEN > ctask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 178518 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask1
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/ctask1"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask1 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask1

# Run the commandline(s)
echo ctask1 $WOOM_CYCLE_TOKEN > ctask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 822018 depending on [366325, 311522]
woom.workflow: DEBUG    Group of 2 sequential tasks:
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask2
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/gtask2"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask2 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask2

# Run the commandline(s)
echo gtask2 $WOOM_CYCLE_TOKEN > gtask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 659046 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask3
woom.workflow: DEBUG      Dependencies: 659046
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/gtask3"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask3 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask3

# Run the commandline(s)
echo gtask3 $WOOM_CYCLE_TOKEN > gtask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 331728 depending on [659046]
woom.workflow: DEBUG    Entering sequence: cycles1
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask2
woom.workflow: DEBUG      Dependencies: 178518, 822018, 331728
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/ctask2"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask2 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask2

# Run the commandline(s)
echo ctask2 $WOOM_CYCLE_TOKEN>  ctask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 332742 depending on [178518, 822018, 331728]
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask3
woom.workflow: DEBUG      Dependencies: 178518, 822018, 331728
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-02T00:00:00+00:00/ctask3"
export WOOM_CYCLE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="0"
export WOOM_CYCLE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-01T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="1"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV=""
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask3 && cd /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask3

# Run the commandline(s)
echo ctask3 $WOOM_CYCLE_TOKEN > ctask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 10842 depending on [178518, 822018, 331728]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-02T00:00:00+00:00
woom.workflow: DEBUG    Running cycle: 2023-08-03T00:00:00+00:00
woom.workflow: DEBUG    Entering sequence: cycles0
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask0
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/ctask0"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask0 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask0

# Run the commandline(s)
sleep 5 ; echo ctask0 $WOOM_CYCLE_TOKEN > ctask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 119942 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/ctask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/ctask1
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/ctask1"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask1 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask1

# Run the commandline(s)
echo ctask1 $WOOM_CYCLE_TOKEN > ctask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 293244 depending on [366325, 311522]
woom.workflow: DEBUG    Group of 2 sequential tasks:
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask2
woom.workflow: DEBUG      Dependencies: 366325, 311522
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/gtask2"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask2 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask2

# Run the commandline(s)
echo gtask2 $WOOM_CYCLE_TOKEN > gtask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 970882 depending on [366325, 311522]
woom.workflow: DEBUG    Running task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles0/gtask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles0/gtask3
woom.workflow: DEBUG      Dependencies: 970882
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="gtask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/gtask3"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask3 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask3

# Run the commandline(s)
echo gtask3 $WOOM_CYCLE_TOKEN > gtask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 616574 depending on [970882]
woom.workflow: DEBUG    Entering sequence: cycles1
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask2
woom.workflow: DEBUG      Dependencies: 119942, 293244, 616574
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/ctask2"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask2 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask2

# Run the commandline(s)
echo ctask2 $WOOM_CYCLE_TOKEN>  ctask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 943088 depending on [119942, 293244, 616574]
woom.workflow: DEBUG    Running task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Cleaning task: cycles/cycles1/ctask3
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.status
woom.workflow: DEBUG    Submitting task: cycles/cycles1/ctask3
woom.workflow: DEBUG      Dependencies: 119942, 293244, 616574
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="ctask3"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask3"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="2023-08-03T00:00:00+00:00/ctask3"
export WOOM_CYCLE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST="0"
export WOOM_CYCLE_IS_LAST="1"
export WOOM_CYCLE_NEXT=""
export WOOM_CYCLE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_BEGIN_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_LABEL_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_DATE_NEXT="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_NEXT="0"
export WOOM_CYCLE_IS_LAST_NEXT="1"
export WOOM_CYCLE_NEXT_NEXT=""
export WOOM_CYCLE_PREV_NEXT="2023-08-02T00:00:00+00:00"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.sh"
export WOOM_CYCLE_BEGIN_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_LABEL_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_TOKEN_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_DATE_PREV="2023-08-02T00:00:00+00:00"
export WOOM_CYCLE_IS_FIRST_PREV="0"
export WOOM_CYCLE_IS_LAST_PREV="0"
export WOOM_CYCLE_NEXT_PREV="2023-08-03T00:00:00+00:00"
export WOOM_CYCLE_PREV_PREV="2023-08-01T00:00:00+00:00"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask3 && cd /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask3

# Run the commandline(s)
echo ctask3 $WOOM_CYCLE_TOKEN > ctask3.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 887799 depending on [119942, 293244, 616574]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-03T00:00:00+00:00
woom.workflow: DEBUG    Entering stage: epilog
woom.workflow: DEBUG    Entering sequence: epilog0
woom.workflow: DEBUG    Running task: epilog/epilog0/etask0
woom.workflow: DEBUG    Cleaning task: epilog/epilog0/etask0
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.status
woom.workflow: DEBUG    Submitting task: epilog/epilog0/etask0
woom.workflow: DEBUG      Dependencies: 116478, 714119, 332742, 10842, 943088, 887799
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="etask0"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/epilog/etask0"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="epilog/etask0"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/epilog/etask0 && cd /home/docs/woom/scratch/woom/epilog/etask0

# Run the commandline(s)
echo etask0 > etask0.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: epilog/epilog0/etask0 with job id 419701 depending on [116478, 714119, 332742, 10842, 943088, 887799]
woom.workflow: DEBUG    Running task: epilog/epilog0/etask1
woom.workflow: DEBUG    Cleaning task: epilog/epilog0/etask1
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.status
woom.workflow: DEBUG    Submitting task: epilog/epilog0/etask1
woom.workflow: DEBUG      Dependencies: 116478, 714119, 332742, 10842, 943088, 887799
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="etask1"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/epilog/etask1"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="epilog/etask1"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/epilog/etask1 && cd /home/docs/woom/scratch/woom/epilog/etask1

# Run the commandline(s)
echo etask1 > etask1.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: epilog/epilog0/etask1 with job id 608448 depending on [116478, 714119, 332742, 10842, 943088, 887799]
woom.workflow: DEBUG    Entering sequence: epilog1
woom.workflow: DEBUG    Running task: epilog/epilog1/etask2
woom.workflow: DEBUG    Cleaning task: epilog/epilog1/etask2
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.sh
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.err
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.out
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.json
woom.workflow: DEBUG    Removed: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.status
woom.workflow: DEBUG    Submitting task: epilog/epilog1/etask2
woom.workflow: DEBUG      Dependencies: 419701, 608448
woom.workflow: DEBUG    Fake submission:
--------------- submission command ---------------
bash /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.sh
-------------- batch script content --------------
#!/bin/bash

# Prolog
set -eo pipefail
on_exit() {
    status=$?
    echo $status > "$WOOM_SUBMISSION_DIR/job.status"
    exit $status
}
trap on_exit EXIT

# Environment variables
export WOOM_TASK_NAME="etask2"
export WOOM_RUN_DIR="/home/docs/woom/scratch/woom/epilog/etask2"
export WOOM_APP_NAME=""
export WOOM_APP_CONF=""
export WOOM_APP_EXP=""
export WOOM_CYCLES_BEGIN_DATE="2023-08-01T00:00:00+00:00"
export WOOM_CYCLES_END_DATE="2023-08-03T00:00:00+00:00"
export WOOM_CYCLES_ROUND="1D"
export WOOM_CYCLES_FREQ="1D"
export WOOM_CYCLES_INDEP="1"
export WOOM_CYCLES_AS_INTERVALS="0"
export WOOM_CYCLES_NCYCLES="0"
export WOOM_APP_PATH=""
export WOOM_TASK_PATH="epilog/etask2"
export WOOM_NMEMBERS="0"
export WOOM_WORKFLOW_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages"
export WOOM_SUBMISSION_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2"
export WOOM_LOG_DIR="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/log"
export WOOM_SCRIPT_PATH="/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.sh"
export PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/bin:$PATH
export PYTHONPATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib/python:$PYTHONPATH
export LIBRARY_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/lib:$LIBRARY_PATH
export INCLUDE_PATH=/home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/include:$INCLUDE_PATH

# Go to run dir
mkdir -p /home/docs/woom/scratch/woom/epilog/etask2 && cd /home/docs/woom/scratch/woom/epilog/etask2

# Run the commandline(s)
echo etask2 > etask2.out >> $WOOM_WORKFLOW_DIR/workflow.out
--------------------------------------------------
woom.workflow: INFO     Submitted task: epilog/epilog1/etask2 with job id 457121 depending on [419701, 608448]
woom.workflow: DEBUG    Running task: epilog/epilog1/etask3
woom.cli    : ERROR    Workflow failed: Can't run a task that is already running. Aborting... Run 'woom kill {status.jobid}' to kill the associated job before re-running.
Traceback (most recent call last):
  File "/home/docs/checkouts/readthedocs.org/user_builds/woom/envs/v2025.10.1/lib/python3.11/site-packages/woom/cli.py", line 353, in main_run
    workflow.run(dry=args.dry_run, update=args.update)
  File "/home/docs/checkouts/readthedocs.org/user_builds/woom/envs/v2025.10.1/lib/python3.11/site-packages/woom/workflow.py", line 580, in run
    raise WorkFlowError(
woom.workflow.WorkFlowError: Can't run a task that is already running. Aborting... Run 'woom kill {status.jobid}' to kill the associated job before re-running.

Normal run

And finally in run it.

$ woom run --log-no-color
woom.cli    : INFO     No extension to load
woom.cli    : INFO     Loaded workflow config
woom.cli    : INFO     Initialized the host manager
woom.cli    : INFO     Loaded hosts config file: hosts.cfg
woom.cli    : INFO     Infered host: local
woom.cli    : INFO     Initialized the task manager
woom.cli    : INFO     Loaded the task config file: tasks.cfg
woom.cli    : INFO     Initialized the workflow
woom.cli    : INFO     Successfully setup the workflow!
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask0/job.sh
woom.job    : INFO     Started job manager: BackgroundJobManager()
woom.workflow: INFO     Submitted task: prolog/prolog0/ptask0 with job id 710
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask1/job.sh
woom.workflow: INFO     Submitted task: prolog/prolog0/ptask1 with job id 712
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask0/job.sh
woom.workflow: INFO     Submitted task: prolog/prolog0/gtask0 with job id 714
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/gtask1/job.sh
woom.workflow: INFO     Submitted task: prolog/prolog0/gtask1 with job id 716 depending on [714]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask2/job.sh
woom.workflow: INFO     Submitted task: prolog/prolog1/ptask2 with job id 718 depending on [710, 712, 716]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/prolog/ptask3/job.sh
woom.workflow: INFO     Submitted task: prolog/prolog1/ptask3 with job id 720 depending on [710, 712, 716]
woom.workflow: INFO     Successfully submitted stage: prolog
woom.workflow: INFO     Cycling on independant dates from 2023-08-01 00:00:00+00:00 to 2023-08-03 00:00:00+00:00 in 3 time(s)
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask0/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 722 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask1/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 725 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 727 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/gtask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 729 depending on [727]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 731 depending on [722, 725, 729]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-01T00:00:00+00:00/ctask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 733 depending on [722, 725, 729]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-01T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask0/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 735 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask1/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 738 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 740 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/gtask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 742 depending on [740]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 747 depending on [735, 738, 742]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-02T00:00:00+00:00/ctask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 749 depending on [735, 738, 742]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-02T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask0/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask0 with job id 751 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask1/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/ctask1 with job id 754 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask2 with job id 756 depending on [718, 720]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/gtask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles0/gtask3 with job id 758 depending on [756]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask2/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask2 with job id 760 depending on [751, 754, 758]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/2023-08-03T00:00:00+00:00/ctask3/job.sh
woom.workflow: INFO     Submitted task: cycles/cycles1/ctask3 with job id 762 depending on [751, 754, 758]
woom.workflow: INFO     Successfully submitted cycle: 2023-08-03T00:00:00+00:00
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask0/job.sh
woom.workflow: INFO     Submitted task: epilog/epilog0/etask0 with job id 764 depending on [731, 733, 747, 749, 760, 762]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask1/job.sh
woom.workflow: INFO     Submitted task: epilog/epilog0/etask1 with job id 766 depending on [731, 733, 747, 749, 760, 762]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask2/job.sh
woom.workflow: INFO     Submitted task: epilog/epilog1/etask2 with job id 768 depending on [764, 766]
woom.workflow: INFO     Created directory: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask3
woom.workflow: INFO     Created batch script: /home/docs/checkouts/readthedocs.org/user_builds/woom/checkouts/v2025.10.1/examples/academic/all_stages/jobs/epilog/etask3/job.sh
woom.workflow: INFO     Submitted task: epilog/epilog1/etask3 with job id 770 depending on [764, 766]
woom.workflow: INFO     Successfully submitted stage: epilog
woom.cli    : INFO     Successfully ran the workflow!

Check status

Check what is running or finished.

$ woom show status
╭──────────┬─────────┬────────┬───────────────────────────┬───────────────────────────────────────╮
│ STATUS   │   JOBID │ TASK   │ CYCLE                     │ SUBMISSION DIR                        │
├──────────┼─────────┼────────┼───────────────────────────┼───────────────────────────────────────┤
│ SUCCESS  │     710 │ ptask0 │ prolog                    │ jobs/prolog/ptask0                    │
│ SUCCESS  │     712 │ ptask1 │ prolog                    │ jobs/prolog/ptask1                    │
│ SUCCESS  │     714 │ gtask0 │ prolog                    │ jobs/prolog/gtask0                    │
│ SUCCESS  │     716 │ gtask1 │ prolog                    │ jobs/prolog/gtask1                    │
│ SUCCESS  │     718 │ ptask2 │ prolog                    │ jobs/prolog/ptask2                    │
│ SUCCESS  │     720 │ ptask3 │ prolog                    │ jobs/prolog/ptask3                    │
│ SUCCESS  │     722 │ ctask0 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/ctask0 │
│ SUCCESS  │     725 │ ctask1 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/ctask1 │
│ SUCCESS  │     727 │ gtask2 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/gtask2 │
│ SUCCESS  │     729 │ gtask3 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/gtask3 │
│ SUCCESS  │     731 │ ctask2 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/ctask2 │
│ SUCCESS  │     733 │ ctask3 │ 2023-08-01T00:00:00+00:00 │ jobs/2023-08-01T00:00:00+00:00/ctask3 │
│ SUCCESS  │     735 │ ctask0 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/ctask0 │
│ SUCCESS  │     738 │ ctask1 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/ctask1 │
│ SUCCESS  │     740 │ gtask2 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/gtask2 │
│ SUCCESS  │     742 │ gtask3 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/gtask3 │
│ SUCCESS  │     747 │ ctask2 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/ctask2 │
│ SUCCESS  │     749 │ ctask3 │ 2023-08-02T00:00:00+00:00 │ jobs/2023-08-02T00:00:00+00:00/ctask3 │
│ SUCCESS  │     751 │ ctask0 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/ctask0 │
│ SUCCESS  │     754 │ ctask1 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/ctask1 │
│ SUCCESS  │     756 │ gtask2 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/gtask2 │
│ SUCCESS  │     758 │ gtask3 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/gtask3 │
│ SUCCESS  │     760 │ ctask2 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/ctask2 │
│ SUCCESS  │     762 │ ctask3 │ 2023-08-03T00:00:00+00:00 │ jobs/2023-08-03T00:00:00+00:00/ctask3 │
│ SUCCESS  │     764 │ etask0 │ epilog                    │ jobs/epilog/etask0                    │
│ SUCCESS  │     766 │ etask1 │ epilog                    │ jobs/epilog/etask1                    │
│ SUCCESS  │     768 │ etask2 │ epilog                    │ jobs/epilog/etask2                    │
│ RUNNING  │     770 │ etask3 │ epilog                    │ jobs/epilog/etask3                    │
╰──────────┴─────────┴────────┴───────────────────────────┴───────────────────────────────────────╯

Show run directories

Show where tasks were executed.

$ woom show run_dirs
╭────────┬───────────────────────────┬───────────────────────────────────────────────────────────────╮
│ TASK   │ CYCLE                     │ RUN DIR                                                       │
├────────┼───────────────────────────┼───────────────────────────────────────────────────────────────┤
│ ptask0 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/ptask0                    │
│ ptask1 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/ptask1                    │
│ gtask0 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/gtask0                    │
│ gtask1 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/gtask1                    │
│ ptask2 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/ptask2                    │
│ ptask3 │ prolog                    │ /home/docs/woom/scratch/woom/prolog/ptask3                    │
│ ctask0 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask0 │
│ ctask1 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask1 │
│ gtask2 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask2 │
│ gtask3 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/gtask3 │
│ ctask2 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask2 │
│ ctask3 │ 2023-08-01T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-01T00:00:00+00:00/ctask3 │
│ ctask0 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask0 │
│ ctask1 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask1 │
│ gtask2 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask2 │
│ gtask3 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/gtask3 │
│ ctask2 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask2 │
│ ctask3 │ 2023-08-02T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-02T00:00:00+00:00/ctask3 │
│ ctask0 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask0 │
│ ctask1 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask1 │
│ gtask2 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask2 │
│ gtask3 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/gtask3 │
│ ctask2 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask2 │
│ ctask3 │ 2023-08-03T00:00:00+00:00 │ /home/docs/woom/scratch/woom/2023-08-03T00:00:00+00:00/ctask3 │
│ etask0 │ epilog                    │ /home/docs/woom/scratch/woom/epilog/etask0                    │
│ etask1 │ epilog                    │ /home/docs/woom/scratch/woom/epilog/etask1                    │
│ etask2 │ epilog                    │ /home/docs/woom/scratch/woom/epilog/etask2                    │
│ etask3 │ epilog                    │ /home/docs/woom/scratch/woom/epilog/etask3                    │
╰────────┴───────────────────────────┴───────────────────────────────────────────────────────────────╯