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User Guide
Installation
Start guide
In-Depth Guide
Workflow Configuration In-Depth
Task Configuration In-Depth
Host Configuration In-Depth
Context and Variables In-Depth
Templating In-Depth
Artifacts In-Depth
Commandline interface
woom
woom show
woom show overview
woom show status
woom show run_dirs
woom show artifacts
woom run
woom fill
woom kill
woom clean
woom monitor
Examples of configuration
Use the templating system
Cycling on date intervals
Template filling capabilities
With a scheduler
Forecast cycles with horizon
Running an ensemble
Working with artifacts
Running all stages
A single task with command line formatting
Extending woom
From python
Reference
Library
woom
woom.woom_warn
woom.WoomDeprecationWarning
woom.WoomError
woom.WoomWarning
woom.cli
woom.cli.add_parser_clean
woom.cli.add_parser_fill
woom.cli.add_parser_kill
woom.cli.add_parser_monitor
woom.cli.add_parser_run
woom.cli.add_parser_show
woom.cli.add_parser_show_artifacts
woom.cli.add_parser_show_overview
woom.cli.add_parser_show_run_dirs
woom.cli.add_parser_show_status
woom.cli.add_parser_show_submission_dirs
woom.cli.get_parser
woom.cli.get_workflow
woom.cli.get_workflow_cfg
woom.cli.main
woom.cli.main_clean
woom.cli.main_fill
woom.cli.main_kill
woom.cli.main_monitor
woom.cli.main_run
woom.cli.main_show_artifacts
woom.cli.main_show_overview
woom.cli.main_show_run_dirs
woom.cli.main_show_status
woom.cli.main_show_submission_dirs
woom.cli.setup_logger
woom.cli.setup_workflow
woom.conf
woom.conf.VALIDATOR_FUNCTIONS
woom.conf.get_cfgspecs
woom.conf.get_validator
woom.conf.inherit_cfg
woom.conf.is_datetime
woom.conf.is_pages
woom.conf.is_path
woom.conf.is_timedelta
woom.conf.keep_sections
woom.conf.load_cfg
woom.conf.merge_args_with_config
woom.conf.strip_out_sections
woom.conf.WoomConfigError
woom.context
woom.context.Context
woom.context.Context.config
woom.context.Context.cycle
woom.context.Context.env_vars
woom.context.Context.member
woom.context.Context.params
woom.context.Context.task
woom.context.Context.workflow
woom.context.Context.clear
woom.context.Context.copy
woom.context.Context.fromkeys
woom.context.Context.get
woom.context.Context.items
woom.context.Context.keys
woom.context.Context.pop
woom.context.Context.popitem
woom.context.Context.setdefault
woom.context.Context.to_json
woom.context.Context.update
woom.context.Context.values
woom.env
woom.env.EnvConfig
woom.env.EnvConfig.append_paths
woom.env.EnvConfig.copy
woom.env.EnvConfig.has_vars
woom.env.EnvConfig.prepend_paths
woom.env.EnvConfig.set_paths
woom.ext
woom.ext.import_from_path
woom.ext.load_artifacts_generators
woom.ext.load_extensions
woom.ext.load_jinja_filters
woom.ext.load_validator_functions
woom.hosts
woom.hosts.Host
woom.hosts.Host.config
woom.hosts.Host.module_setup
woom.hosts.Host.name
woom.hosts.Host.queues
woom.hosts.Host.scheduler
woom.hosts.Host.get_env
woom.hosts.Host.get_jobmanager
woom.hosts.Host.get_params
woom.hosts.Host.get_queue
woom.hosts.HostManager
woom.hosts.HostManager.config
woom.hosts.HostManager.from_config_files
woom.hosts.HostManager.get_host
woom.hosts.HostManager.infer_host
woom.hosts.HostManager.load_config
woom.hosts.HostManager.to_json_entry
woom.hosts.HostError
woom.iters
woom.iters.gen_cycles
woom.iters.gen_ensemble
woom.iters.Cycle
woom.iters.Cycle.begin_date
woom.iters.Cycle.date
woom.iters.Cycle.is_interval
woom.iters.Cycle.is_first
woom.iters.Cycle.is_last
woom.iters.Cycle.horizon
woom.iters.Cycle.end_date
woom.iters.Cycle.duration
woom.iters.Cycle.label
woom.iters.Cycle.token
woom.iters.Cycle.next
woom.iters.Cycle.prev
woom.iters.Cycle.describe
woom.iters.Cycle.get_env_vars
woom.iters.Cycle.get_params
woom.iters.Member
woom.iters.Member.env_vars
woom.iters.Member.label
woom.iters.Member.params
woom.iters.Member.props
woom.iters.Member.rank
woom.iters.Member.id
woom.iters.Member.nmembers
woom.iters.Member.set_prop
woom.job
woom.job.BackgroundJobManager
woom.job.BackgroundJobManager.commands
woom.job.BackgroundJobManager.status_names
woom.job.BackgroundJobManager.with_scheduler
woom.job.BackgroundJobManager.check_status
woom.job.BackgroundJobManager.create_job
woom.job.BackgroundJobManager.delete
woom.job.BackgroundJobManager.drop
woom.job.BackgroundJobManager.dump
woom.job.BackgroundJobManager.from_scheduler
woom.job.BackgroundJobManager.get_command_args
woom.job.BackgroundJobManager.get_job
woom.job.BackgroundJobManager.get_jobs
woom.job.BackgroundJobManager.get_overview
woom.job.BackgroundJobManager.get_status
woom.job.BackgroundJobManager.get_submission_command
woom.job.BackgroundJobManager.kill
woom.job.BackgroundJobManager.load
woom.job.BackgroundJobManager.load_job
woom.job.BackgroundJobManager.set_status
woom.job.BackgroundJobManager.submit
woom.job.Job
woom.job.Job.files
woom.job.Job.overview_format
woom.job.Job.dump
woom.job.Job.get_overview
woom.job.Job.get_overview_header
woom.job.Job.get_status
woom.job.Job.is_running
woom.job.Job.kill
woom.job.Job.load
woom.job.Job.query_status
woom.job.Job.set_status
woom.job.Job.to_dict
woom.job.Job.wait
woom.job.JobStatus
woom.job.JobStatus.jobid
woom.job.JobStatus.SKIPPED
woom.job.JobStatus.TERMINATED
woom.job.JobStatus.FAILED
woom.job.JobStatus.ERROR
woom.job.JobStatus.SUCCESS
woom.job.JobStatus.KILLED
woom.job.JobStatus.NOTSUBMITTED
woom.job.JobStatus.FINISHED
woom.job.JobStatus.UNKNOWN
woom.job.JobStatus.PENDING
woom.job.JobStatus.RUNNING
woom.job.JobStatus.INQUEUE
woom.job.JobStatus.EXITING
woom.job.JobStatus.COMPLETING
woom.job.JobStatus.is_running
woom.job.JobStatus.is_not_running
woom.job.JobStatus.is_unknown
woom.job.JobStatus.has_been_canceled
woom.job.JobStatus.has_failed
woom.job.PbsproJobManager
woom.job.PbsproJobManager.commands
woom.job.PbsproJobManager.jobid_sep
woom.job.PbsproJobManager.status_names
woom.job.PbsproJobManager.with_scheduler
woom.job.PbsproJobManager.check_status
woom.job.PbsproJobManager.create_job
woom.job.PbsproJobManager.delete
woom.job.PbsproJobManager.drop
woom.job.PbsproJobManager.dump
woom.job.PbsproJobManager.from_scheduler
woom.job.PbsproJobManager.get_command_args
woom.job.PbsproJobManager.get_job
woom.job.PbsproJobManager.get_jobs
woom.job.PbsproJobManager.get_killed
woom.job.PbsproJobManager.get_overview
woom.job.PbsproJobManager.get_status
woom.job.PbsproJobManager.get_submission_command
woom.job.PbsproJobManager.kill
woom.job.PbsproJobManager.load
woom.job.PbsproJobManager.load_job
woom.job.PbsproJobManager.set_status
woom.job.PbsproJobManager.submit
woom.job.ScheduledJob
woom.job.ScheduledJob.files
woom.job.ScheduledJob.overview_format
woom.job.ScheduledJob.cancel
woom.job.ScheduledJob.dump
woom.job.ScheduledJob.get_overview
woom.job.ScheduledJob.get_overview_header
woom.job.ScheduledJob.get_status
woom.job.ScheduledJob.is_running
woom.job.ScheduledJob.kill
woom.job.ScheduledJob.load
woom.job.ScheduledJob.query_status
woom.job.ScheduledJob.set_status
woom.job.ScheduledJob.to_dict
woom.job.ScheduledJob.wait
woom.job.SlurmJobManager
woom.job.SlurmJobManager.commands
woom.job.SlurmJobManager.history_status_names
woom.job.SlurmJobManager.jobid_sep
woom.job.SlurmJobManager.status_names
woom.job.SlurmJobManager.with_scheduler
woom.job.SlurmJobManager.check_status
woom.job.SlurmJobManager.create_job
woom.job.SlurmJobManager.delete
woom.job.SlurmJobManager.drop
woom.job.SlurmJobManager.dump
woom.job.SlurmJobManager.from_scheduler
woom.job.SlurmJobManager.get_command_args
woom.job.SlurmJobManager.get_job
woom.job.SlurmJobManager.get_jobs
woom.job.SlurmJobManager.get_killed
woom.job.SlurmJobManager.get_overview
woom.job.SlurmJobManager.get_status
woom.job.SlurmJobManager.get_submission_command
woom.job.SlurmJobManager.kill
woom.job.SlurmJobManager.load
woom.job.SlurmJobManager.load_job
woom.job.SlurmJobManager.set_status
woom.job.SlurmJobManager.submit
woom.job.WoomJobError
woom.log
woom.log.add_log_level_parser_arguments
woom.log.add_logging_parser_arguments
woom.log.main_setup_logging
woom.log.setup_logging
woom.render
woom.render.JINJA_ENV
woom.render.JINJA_FILTERS
woom.render.filter_as_env_str
woom.render.filter_replicate_option
woom.render.filter_strftime
woom.render.get_jinja_filter
woom.render.render
woom.render.setup_template_loader
woom.render.WoomLoader
woom.render.WoomLoader.has_source_access
woom.render.WoomLoader.get_source
woom.render.WoomLoader.list_templates
woom.render.WoomLoader.load
woom.tasks
woom.tasks.CFGSPECS_FILE
woom.tasks.CFG_DEFAULT_FILE
woom.tasks.ARTIFACTS_GENERATORS
woom.tasks.Task
woom.tasks.Task.artifacts
woom.tasks.Task.commandline
woom.tasks.Task.config
woom.tasks.Task.context
woom.tasks.Task.env
woom.tasks.Task.host
woom.tasks.Task.is_blocking
woom.tasks.Task.is_skipped
woom.tasks.Task.name
woom.tasks.Task.run_dir
woom.tasks.Task.export
woom.tasks.Task.export_scheduler_options
woom.tasks.Task.fill_templates
woom.tasks.Task.get_artifact_path
woom.tasks.Task.get_artifacts
woom.tasks.Task.has_context
woom.tasks.Task.render_artifacts
woom.tasks.Task.render_content
woom.tasks.Task.set_context
woom.tasks.TaskManager
woom.tasks.TaskManager.config
woom.tasks.TaskManager.host
woom.tasks.TaskManager.from_config_files
woom.tasks.TaskManager.get_task
woom.tasks.TaskManager.load_config
woom.tasks.TaskManager.to_json_entry
woom.tasks.TaskTree
woom.tasks.TaskTree.get_task_stage
woom.tasks.TaskTree.to_dict
woom.tasks.TaskError
woom.util
woom.util.COLORS
woom.util.check_dir
woom.util.colorize
woom.util.dict_to_env_vars
woom.util.flatten
woom.util.pages2ints
woom.util.set_deep_item
woom.util.WoomDate
woom.util.WoomDate.asm8
woom.util.WoomDate.day
woom.util.WoomDate.day_of_week
woom.util.WoomDate.day_of_year
woom.util.WoomDate.dayofweek
woom.util.WoomDate.dayofyear
woom.util.WoomDate.days_in_month
woom.util.WoomDate.daysinmonth
woom.util.WoomDate.fold
woom.util.WoomDate.hour
woom.util.WoomDate.is_leap_year
woom.util.WoomDate.is_month_end
woom.util.WoomDate.is_month_start
woom.util.WoomDate.is_quarter_end
woom.util.WoomDate.is_quarter_start
woom.util.WoomDate.is_year_end
woom.util.WoomDate.is_year_start
woom.util.WoomDate.max
woom.util.WoomDate.microsecond
woom.util.WoomDate.min
woom.util.WoomDate.minute
woom.util.WoomDate.month
woom.util.WoomDate.nanosecond
woom.util.WoomDate.quarter
woom.util.WoomDate.resolution
woom.util.WoomDate.second
woom.util.WoomDate.tz
woom.util.WoomDate.tzinfo
woom.util.WoomDate.unit
woom.util.WoomDate.value
woom.util.WoomDate.week
woom.util.WoomDate.weekofyear
woom.util.WoomDate.year
woom.util.WoomDate.add
woom.util.WoomDate.as_unit
woom.util.WoomDate.astimezone
woom.util.WoomDate.ceil
woom.util.WoomDate.combine
woom.util.WoomDate.ctime
woom.util.WoomDate.date
woom.util.WoomDate.day_name
woom.util.WoomDate.dst
woom.util.WoomDate.floor
woom.util.WoomDate.fromisocalendar
woom.util.WoomDate.fromisoformat
woom.util.WoomDate.fromordinal
woom.util.WoomDate.fromtimestamp
woom.util.WoomDate.isocalendar
woom.util.WoomDate.isoformat
woom.util.WoomDate.isoweekday
woom.util.WoomDate.month_name
woom.util.WoomDate.normalize
woom.util.WoomDate.now
woom.util.WoomDate.re_match_since
woom.util.WoomDate.replace
woom.util.WoomDate.round
woom.util.WoomDate.strftime
woom.util.WoomDate.strptime
woom.util.WoomDate.time
woom.util.WoomDate.timestamp
woom.util.WoomDate.timetuple
woom.util.WoomDate.timetz
woom.util.WoomDate.to_datetime64
woom.util.WoomDate.to_julian_date
woom.util.WoomDate.to_numpy
woom.util.WoomDate.to_period
woom.util.WoomDate.to_pydatetime
woom.util.WoomDate.today
woom.util.WoomDate.toordinal
woom.util.WoomDate.tz_convert
woom.util.WoomDate.tz_localize
woom.util.WoomDate.tzname
woom.util.WoomDate.utcfromtimestamp
woom.util.WoomDate.utcnow
woom.util.WoomDate.utcoffset
woom.util.WoomDate.utctimetuple
woom.util.WoomDate.weekday
woom.util.WoomJSONEncoder
woom.util.WoomJSONEncoder.item_separator
woom.util.WoomJSONEncoder.key_separator
woom.util.WoomJSONEncoder.default
woom.util.WoomJSONEncoder.encode
woom.util.WoomJSONEncoder.iterencode
woom.workflow
woom.workflow.Workflow
woom.workflow.Workflow.config
woom.workflow.Workflow.context
woom.workflow.Workflow.cycles
woom.workflow.Workflow.host
woom.workflow.Workflow.jobmanager
woom.workflow.Workflow.members
woom.workflow.Workflow.nmembers
woom.workflow.Workflow.output_directories
woom.workflow.Workflow.paths
woom.workflow.Workflow.submission_dirs
woom.workflow.Workflow.task_tree
woom.workflow.Workflow.taskmanager
woom.workflow.Workflow.workflow_dir
woom.workflow.Workflow.clean
woom.workflow.Workflow.clean_task
woom.workflow.Workflow.fill_templates
woom.workflow.Workflow.get_app_path
woom.workflow.Workflow.get_artifacts
woom.workflow.Workflow.get_context
woom.workflow.Workflow.get_cycle
woom.workflow.Workflow.get_member
woom.workflow.Workflow.get_run_dirs
woom.workflow.Workflow.get_status
woom.workflow.Workflow.get_submission_dirs
woom.workflow.Workflow.get_task
woom.workflow.Workflow.get_task_artifact_paths
woom.workflow.Workflow.get_task_artifacts
woom.workflow.Workflow.get_task_cycle
woom.workflow.Workflow.get_task_items
woom.workflow.Workflow.get_task_member
woom.workflow.Workflow.get_task_members
woom.workflow.Workflow.get_task_path
woom.workflow.Workflow.get_task_run_dir
woom.workflow.Workflow.get_task_status
woom.workflow.Workflow.get_task_submission_dir
woom.workflow.Workflow.is_task_blocking
woom.workflow.Workflow.is_task_skipped
woom.workflow.Workflow.kill
woom.workflow.Workflow.run
woom.workflow.Workflow.set_context
woom.workflow.Workflow.show_artifacts
woom.workflow.Workflow.show_overview
woom.workflow.Workflow.show_run_dirs
woom.workflow.Workflow.show_status
woom.workflow.Workflow.show_submission_dirs
woom.workflow.Workflow.submit_sentinel
woom.workflow.Workflow.submit_task
woom.workflow.Workflow.submit_task_fake
woom.workflow.Workflow.terminate_blocking_jobs
woom.workflow.Workflow.to_json_entry
woom.workflow.WorkFlowError
Jinja templates
Input mappings
Input context
Input environment variables
Configuration specifications
Hosts configuration specifications
Tasks configuration specifications
Workflow configuration specifications
What’s new
Contributing guide
Github repository
Repository
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woom.WoomWarning
Contents
WoomWarning
woom.WoomWarning
#
exception
woom.
WoomWarning
[source]
#
Contents
WoomWarning
