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User Guide
Installation
Start guide
In-Depth Guide
Workflow Configuration In-Depth
Task Configuration In-Depth
Host Configuration In-Depth
Context and Variables In-Depth
Templating In-Depth
Artifacts In-Depth
Commandline interface
woom
woom show
woom show overview
woom show status
woom show run_dirs
woom show artifacts
woom run
woom fill
woom kill
woom clean
woom monitor
Examples of configuration
Use the templating system
Cycling on date intervals
Template filling capabilities
With a scheduler
Forecast cycles with horizon
Running an ensemble
Working with artifacts
Running all stages
A single task with command line formatting
Extending woom
From python
Reference
Library
woom
woom.woom_warn
woom.WoomDeprecationWarning
woom.WoomError
woom.WoomWarning
woom.cli
woom.cli.add_parser_clean
woom.cli.add_parser_fill
woom.cli.add_parser_kill
woom.cli.add_parser_monitor
woom.cli.add_parser_run
woom.cli.add_parser_show
woom.cli.add_parser_show_artifacts
woom.cli.add_parser_show_overview
woom.cli.add_parser_show_run_dirs
woom.cli.add_parser_show_status
woom.cli.add_parser_show_submission_dirs
woom.cli.get_parser
woom.cli.get_workflow
woom.cli.get_workflow_cfg
woom.cli.main
woom.cli.main_clean
woom.cli.main_fill
woom.cli.main_kill
woom.cli.main_monitor
woom.cli.main_run
woom.cli.main_show_artifacts
woom.cli.main_show_overview
woom.cli.main_show_run_dirs
woom.cli.main_show_status
woom.cli.main_show_submission_dirs
woom.cli.setup_logger
woom.cli.setup_workflow
woom.conf
woom.conf.VALIDATOR_FUNCTIONS
woom.conf.get_cfgspecs
woom.conf.get_validator
woom.conf.inherit_cfg
woom.conf.is_datetime
woom.conf.is_pages
woom.conf.is_path
woom.conf.is_timedelta
woom.conf.keep_sections
woom.conf.load_cfg
woom.conf.merge_args_with_config
woom.conf.strip_out_sections
woom.conf.WoomConfigError
woom.context
woom.context.Context
woom.context.Context.config
woom.context.Context.cycle
woom.context.Context.env_vars
woom.context.Context.member
woom.context.Context.params
woom.context.Context.task
woom.context.Context.workflow
woom.context.Context.clear
woom.context.Context.copy
woom.context.Context.fromkeys
woom.context.Context.get
woom.context.Context.items
woom.context.Context.keys
woom.context.Context.pop
woom.context.Context.popitem
woom.context.Context.setdefault
woom.context.Context.to_json
woom.context.Context.update
woom.context.Context.values
woom.env
woom.env.EnvConfig
woom.env.EnvConfig.append_paths
woom.env.EnvConfig.copy
woom.env.EnvConfig.has_vars
woom.env.EnvConfig.prepend_paths
woom.env.EnvConfig.set_paths
woom.ext
woom.ext.import_from_path
woom.ext.load_artifacts_generators
woom.ext.load_extensions
woom.ext.load_jinja_filters
woom.ext.load_validator_functions
woom.hosts
woom.hosts.Host
woom.hosts.Host.config
woom.hosts.Host.module_setup
woom.hosts.Host.name
woom.hosts.Host.queues
woom.hosts.Host.scheduler
woom.hosts.Host.get_env
woom.hosts.Host.get_jobmanager
woom.hosts.Host.get_params
woom.hosts.Host.get_queue
woom.hosts.HostManager
woom.hosts.HostManager.config
woom.hosts.HostManager.from_config_files
woom.hosts.HostManager.get_host
woom.hosts.HostManager.infer_host
woom.hosts.HostManager.load_config
woom.hosts.HostManager.to_json_entry
woom.hosts.HostError
woom.iters
woom.iters.gen_cycles
woom.iters.gen_ensemble
woom.iters.Cycle
woom.iters.Cycle.begin_date
woom.iters.Cycle.date
woom.iters.Cycle.is_interval
woom.iters.Cycle.is_first
woom.iters.Cycle.is_last
woom.iters.Cycle.horizon
woom.iters.Cycle.end_date
woom.iters.Cycle.duration
woom.iters.Cycle.label
woom.iters.Cycle.token
woom.iters.Cycle.next
woom.iters.Cycle.prev
woom.iters.Cycle.describe
woom.iters.Cycle.get_env_vars
woom.iters.Cycle.get_params
woom.iters.Member
woom.iters.Member.env_vars
woom.iters.Member.label
woom.iters.Member.params
woom.iters.Member.props
woom.iters.Member.rank
woom.iters.Member.id
woom.iters.Member.nmembers
woom.iters.Member.set_prop
woom.job
woom.job.BackgroundJobManager
woom.job.BackgroundJobManager.commands
woom.job.BackgroundJobManager.status_names
woom.job.BackgroundJobManager.with_scheduler
woom.job.BackgroundJobManager.check_status
woom.job.BackgroundJobManager.create_job
woom.job.BackgroundJobManager.delete
woom.job.BackgroundJobManager.drop
woom.job.BackgroundJobManager.dump
woom.job.BackgroundJobManager.from_scheduler
woom.job.BackgroundJobManager.get_command_args
woom.job.BackgroundJobManager.get_job
woom.job.BackgroundJobManager.get_jobs
woom.job.BackgroundJobManager.get_overview
woom.job.BackgroundJobManager.get_status
woom.job.BackgroundJobManager.get_submission_command
woom.job.BackgroundJobManager.kill
woom.job.BackgroundJobManager.load
woom.job.BackgroundJobManager.load_job
woom.job.BackgroundJobManager.set_status
woom.job.BackgroundJobManager.submit
woom.job.Job
woom.job.Job.files
woom.job.Job.overview_format
woom.job.Job.dump
woom.job.Job.get_overview
woom.job.Job.get_overview_header
woom.job.Job.get_status
woom.job.Job.is_running
woom.job.Job.kill
woom.job.Job.load
woom.job.Job.query_status
woom.job.Job.set_status
woom.job.Job.to_dict
woom.job.Job.wait
woom.job.JobStatus
woom.job.JobStatus.jobid
woom.job.JobStatus.SKIPPED
woom.job.JobStatus.TERMINATED
woom.job.JobStatus.FAILED
woom.job.JobStatus.ERROR
woom.job.JobStatus.SUCCESS
woom.job.JobStatus.KILLED
woom.job.JobStatus.NOTSUBMITTED
woom.job.JobStatus.FINISHED
woom.job.JobStatus.UNKNOWN
woom.job.JobStatus.PENDING
woom.job.JobStatus.RUNNING
woom.job.JobStatus.INQUEUE
woom.job.JobStatus.EXITING
woom.job.JobStatus.COMPLETING
woom.job.JobStatus.is_running
woom.job.JobStatus.is_not_running
woom.job.JobStatus.is_unknown
woom.job.JobStatus.has_been_canceled
woom.job.JobStatus.has_failed
woom.job.PbsproJobManager
woom.job.PbsproJobManager.commands
woom.job.PbsproJobManager.jobid_sep
woom.job.PbsproJobManager.status_names
woom.job.PbsproJobManager.with_scheduler
woom.job.PbsproJobManager.check_status
woom.job.PbsproJobManager.create_job
woom.job.PbsproJobManager.delete
woom.job.PbsproJobManager.drop
woom.job.PbsproJobManager.dump
woom.job.PbsproJobManager.from_scheduler
woom.job.PbsproJobManager.get_command_args
woom.job.PbsproJobManager.get_job
woom.job.PbsproJobManager.get_jobs
woom.job.PbsproJobManager.get_killed
woom.job.PbsproJobManager.get_overview
woom.job.PbsproJobManager.get_status
woom.job.PbsproJobManager.get_submission_command
woom.job.PbsproJobManager.kill
woom.job.PbsproJobManager.load
woom.job.PbsproJobManager.load_job
woom.job.PbsproJobManager.set_status
woom.job.PbsproJobManager.submit
woom.job.ScheduledJob
woom.job.ScheduledJob.files
woom.job.ScheduledJob.overview_format
woom.job.ScheduledJob.cancel
woom.job.ScheduledJob.dump
woom.job.ScheduledJob.get_overview
woom.job.ScheduledJob.get_overview_header
woom.job.ScheduledJob.get_status
woom.job.ScheduledJob.is_running
woom.job.ScheduledJob.kill
woom.job.ScheduledJob.load
woom.job.ScheduledJob.query_status
woom.job.ScheduledJob.set_status
woom.job.ScheduledJob.to_dict
woom.job.ScheduledJob.wait
woom.job.SlurmJobManager
woom.job.SlurmJobManager.commands
woom.job.SlurmJobManager.history_status_names
woom.job.SlurmJobManager.jobid_sep
woom.job.SlurmJobManager.status_names
woom.job.SlurmJobManager.with_scheduler
woom.job.SlurmJobManager.check_status
woom.job.SlurmJobManager.create_job
woom.job.SlurmJobManager.delete
woom.job.SlurmJobManager.drop
woom.job.SlurmJobManager.dump
woom.job.SlurmJobManager.from_scheduler
woom.job.SlurmJobManager.get_command_args
woom.job.SlurmJobManager.get_job
woom.job.SlurmJobManager.get_jobs
woom.job.SlurmJobManager.get_killed
woom.job.SlurmJobManager.get_overview
woom.job.SlurmJobManager.get_status
woom.job.SlurmJobManager.get_submission_command
woom.job.SlurmJobManager.kill
woom.job.SlurmJobManager.load
woom.job.SlurmJobManager.load_job
woom.job.SlurmJobManager.set_status
woom.job.SlurmJobManager.submit
woom.job.WoomJobError
woom.log
woom.log.add_log_level_parser_arguments
woom.log.add_logging_parser_arguments
woom.log.main_setup_logging
woom.log.setup_logging
woom.render
woom.render.JINJA_ENV
woom.render.JINJA_FILTERS
woom.render.filter_as_env_str
woom.render.filter_replicate_option
woom.render.filter_strftime
woom.render.get_jinja_filter
woom.render.render
woom.render.setup_template_loader
woom.render.WoomLoader
woom.render.WoomLoader.has_source_access
woom.render.WoomLoader.get_source
woom.render.WoomLoader.list_templates
woom.render.WoomLoader.load
woom.tasks
woom.tasks.CFGSPECS_FILE
woom.tasks.CFG_DEFAULT_FILE
woom.tasks.ARTIFACTS_GENERATORS
woom.tasks.Task
woom.tasks.Task.artifacts
woom.tasks.Task.commandline
woom.tasks.Task.config
woom.tasks.Task.context
woom.tasks.Task.env
woom.tasks.Task.host
woom.tasks.Task.is_blocking
woom.tasks.Task.is_skipped
woom.tasks.Task.name
woom.tasks.Task.run_dir
woom.tasks.Task.export
woom.tasks.Task.export_scheduler_options
woom.tasks.Task.fill_templates
woom.tasks.Task.get_artifact_path
woom.tasks.Task.get_artifacts
woom.tasks.Task.has_context
woom.tasks.Task.render_artifacts
woom.tasks.Task.render_content
woom.tasks.Task.set_context
woom.tasks.TaskManager
woom.tasks.TaskManager.config
woom.tasks.TaskManager.host
woom.tasks.TaskManager.from_config_files
woom.tasks.TaskManager.get_task
woom.tasks.TaskManager.load_config
woom.tasks.TaskManager.to_json_entry
woom.tasks.TaskTree
woom.tasks.TaskTree.get_task_stage
woom.tasks.TaskTree.to_dict
woom.tasks.TaskError
woom.util
woom.util.COLORS
woom.util.check_dir
woom.util.colorize
woom.util.dict_to_env_vars
woom.util.flatten
woom.util.pages2ints
woom.util.set_deep_item
woom.util.WoomDate
woom.util.WoomDate.asm8
woom.util.WoomDate.day
woom.util.WoomDate.day_of_week
woom.util.WoomDate.day_of_year
woom.util.WoomDate.dayofweek
woom.util.WoomDate.dayofyear
woom.util.WoomDate.days_in_month
woom.util.WoomDate.daysinmonth
woom.util.WoomDate.fold
woom.util.WoomDate.hour
woom.util.WoomDate.is_leap_year
woom.util.WoomDate.is_month_end
woom.util.WoomDate.is_month_start
woom.util.WoomDate.is_quarter_end
woom.util.WoomDate.is_quarter_start
woom.util.WoomDate.is_year_end
woom.util.WoomDate.is_year_start
woom.util.WoomDate.max
woom.util.WoomDate.microsecond
woom.util.WoomDate.min
woom.util.WoomDate.minute
woom.util.WoomDate.month
woom.util.WoomDate.nanosecond
woom.util.WoomDate.quarter
woom.util.WoomDate.resolution
woom.util.WoomDate.second
woom.util.WoomDate.tz
woom.util.WoomDate.tzinfo
woom.util.WoomDate.unit
woom.util.WoomDate.value
woom.util.WoomDate.week
woom.util.WoomDate.weekofyear
woom.util.WoomDate.year
woom.util.WoomDate.add
woom.util.WoomDate.as_unit
woom.util.WoomDate.astimezone
woom.util.WoomDate.ceil
woom.util.WoomDate.combine
woom.util.WoomDate.ctime
woom.util.WoomDate.date
woom.util.WoomDate.day_name
woom.util.WoomDate.dst
woom.util.WoomDate.floor
woom.util.WoomDate.fromisocalendar
woom.util.WoomDate.fromisoformat
woom.util.WoomDate.fromordinal
woom.util.WoomDate.fromtimestamp
woom.util.WoomDate.isocalendar
woom.util.WoomDate.isoformat
woom.util.WoomDate.isoweekday
woom.util.WoomDate.month_name
woom.util.WoomDate.normalize
woom.util.WoomDate.now
woom.util.WoomDate.re_match_since
woom.util.WoomDate.replace
woom.util.WoomDate.round
woom.util.WoomDate.strftime
woom.util.WoomDate.strptime
woom.util.WoomDate.time
woom.util.WoomDate.timestamp
woom.util.WoomDate.timetuple
woom.util.WoomDate.timetz
woom.util.WoomDate.to_datetime64
woom.util.WoomDate.to_julian_date
woom.util.WoomDate.to_numpy
woom.util.WoomDate.to_period
woom.util.WoomDate.to_pydatetime
woom.util.WoomDate.today
woom.util.WoomDate.toordinal
woom.util.WoomDate.tz_convert
woom.util.WoomDate.tz_localize
woom.util.WoomDate.tzname
woom.util.WoomDate.utcfromtimestamp
woom.util.WoomDate.utcnow
woom.util.WoomDate.utcoffset
woom.util.WoomDate.utctimetuple
woom.util.WoomDate.weekday
woom.util.WoomJSONEncoder
woom.util.WoomJSONEncoder.item_separator
woom.util.WoomJSONEncoder.key_separator
woom.util.WoomJSONEncoder.default
woom.util.WoomJSONEncoder.encode
woom.util.WoomJSONEncoder.iterencode
woom.workflow
woom.workflow.Workflow
woom.workflow.Workflow.config
woom.workflow.Workflow.context
woom.workflow.Workflow.cycles
woom.workflow.Workflow.host
woom.workflow.Workflow.jobmanager
woom.workflow.Workflow.members
woom.workflow.Workflow.nmembers
woom.workflow.Workflow.output_directories
woom.workflow.Workflow.paths
woom.workflow.Workflow.submission_dirs
woom.workflow.Workflow.task_tree
woom.workflow.Workflow.taskmanager
woom.workflow.Workflow.workflow_dir
woom.workflow.Workflow.clean
woom.workflow.Workflow.clean_task
woom.workflow.Workflow.fill_templates
woom.workflow.Workflow.get_app_path
woom.workflow.Workflow.get_artifacts
woom.workflow.Workflow.get_context
woom.workflow.Workflow.get_cycle
woom.workflow.Workflow.get_member
woom.workflow.Workflow.get_run_dirs
woom.workflow.Workflow.get_status
woom.workflow.Workflow.get_submission_dirs
woom.workflow.Workflow.get_task
woom.workflow.Workflow.get_task_artifact_paths
woom.workflow.Workflow.get_task_artifacts
woom.workflow.Workflow.get_task_cycle
woom.workflow.Workflow.get_task_items
woom.workflow.Workflow.get_task_member
woom.workflow.Workflow.get_task_members
woom.workflow.Workflow.get_task_path
woom.workflow.Workflow.get_task_run_dir
woom.workflow.Workflow.get_task_status
woom.workflow.Workflow.get_task_submission_dir
woom.workflow.Workflow.is_task_blocking
woom.workflow.Workflow.is_task_skipped
woom.workflow.Workflow.kill
woom.workflow.Workflow.run
woom.workflow.Workflow.set_context
woom.workflow.Workflow.show_artifacts
woom.workflow.Workflow.show_overview
woom.workflow.Workflow.show_run_dirs
woom.workflow.Workflow.show_status
woom.workflow.Workflow.show_submission_dirs
woom.workflow.Workflow.submit_sentinel
woom.workflow.Workflow.submit_task
woom.workflow.Workflow.submit_task_fake
woom.workflow.Workflow.terminate_blocking_jobs
woom.workflow.Workflow.to_json_entry
woom.workflow.WorkFlowError
Jinja templates
Input mappings
Input context
Input environment variables
Configuration specifications
Hosts configuration specifications
Tasks configuration specifications
Workflow configuration specifications
What’s new
Contributing guide
Github repository
Repository
Show source
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.rst
.pdf
woom.cli.setup_workflow
Contents
setup_workflow()
woom.cli.setup_workflow
#
woom.cli.
setup_workflow
(
parser
,
args
)
[source]
#
Contents
setup_workflow()
