Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | Y _ __init__() (woom.context.Context method) (woom.env.EnvConfig method) (woom.hosts.Host method) (woom.hosts.HostManager method) (woom.iters.Cycle method) (woom.iters.Member method) (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.JobStatus method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) (woom.render.WoomLoader method) (woom.tasks.Task method) (woom.tasks.TaskManager method) (woom.tasks.TaskTree method) (woom.util.WoomDate method) (woom.util.WoomJSONEncoder method) (woom.workflow.Workflow method) A add() (woom.util.WoomDate method) add_log_level_parser_arguments() (in module woom.log) add_logging_parser_arguments() (in module woom.log) add_parser_clean() (in module woom.cli) add_parser_fill() (in module woom.cli) add_parser_kill() (in module woom.cli) add_parser_monitor() (in module woom.cli) add_parser_run() (in module woom.cli) add_parser_show() (in module woom.cli) add_parser_show_artifacts() (in module woom.cli) add_parser_show_overview() (in module woom.cli) add_parser_show_run_dirs() (in module woom.cli) add_parser_show_status() (in module woom.cli) add_parser_show_submission_dirs() (in module woom.cli) append_paths() (woom.env.EnvConfig method) artifacts (woom.tasks.Task property) ARTIFACTS_GENERATORS (in module woom.tasks) as_unit() (woom.util.WoomDate method) asm8 (woom.util.WoomDate attribute) astimezone() (woom.util.WoomDate method) B BackgroundJobManager (class in woom.job) begin_date (woom.iters.Cycle attribute) C cancel() (woom.job.ScheduledJob method) ceil() (woom.util.WoomDate method) CFG_DEFAULT_FILE (in module woom.tasks) CFGSPECS_FILE (in module woom.tasks) check_dir() (in module woom.util) check_status() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) clean() (woom.workflow.Workflow method) clean_task() (woom.workflow.Workflow method) clear() (woom.context.Context method) colorize() (in module woom.util) COLORS (in module woom.util) combine() (woom.util.WoomDate class method) commandline (woom.tasks.Task property) commands (woom.job.BackgroundJobManager attribute) (woom.job.PbsproJobManager attribute) (woom.job.SlurmJobManager attribute) COMPLETING (woom.job.JobStatus attribute) config (woom.context.Context property) (woom.hosts.Host property) (woom.hosts.HostManager property) (woom.tasks.Task property) (woom.tasks.TaskManager property) (woom.workflow.Workflow property) Context (class in woom.context) context (woom.tasks.Task property) (woom.workflow.Workflow property) copy() (woom.context.Context method) (woom.env.EnvConfig method) create_job() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) ctime() (woom.util.WoomDate method) Cycle (class in woom.iters) cycle (woom.context.Context property) cycles (woom.workflow.Workflow property) D date (woom.iters.Cycle attribute) date() (woom.util.WoomDate method) day (woom.util.WoomDate attribute) day_name() (woom.util.WoomDate method) day_of_week (woom.util.WoomDate attribute) day_of_year (woom.util.WoomDate attribute) dayofweek (woom.util.WoomDate attribute) dayofyear (woom.util.WoomDate attribute) days_in_month (woom.util.WoomDate attribute) daysinmonth (woom.util.WoomDate attribute) default() (woom.util.WoomJSONEncoder method) delete() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) describe() (woom.iters.Cycle method) dict_to_env_vars() (in module woom.util) drop() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) dst() (woom.util.WoomDate method) dump() (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) duration (woom.iters.Cycle attribute) E encode() (woom.util.WoomJSONEncoder method) end_date (woom.iters.Cycle attribute) env (woom.tasks.Task property) env_vars (woom.context.Context property) (woom.iters.Member property) EnvConfig (class in woom.env) environment variable INCLUDE_PATH, [1] LIBRARY_PATH, [1] PATH, [1] PYTHONPATH, [1] SCRATCH WOOM_APP_CONF WOOM_APP_EXP WOOM_APP_NAME WOOM_APP_PATH WOOM_CYCLE WOOM_CYCLE_BEGIN_DATE WOOM_CYCLE_BEGIN_DATE_NEXT WOOM_CYCLE_BEGIN_DATE_PREV WOOM_CYCLE_DURATION WOOM_CYCLE_DURATION_NEXT WOOM_CYCLE_DURATION_PREV WOOM_CYCLE_END_DATE WOOM_CYCLE_END_DATE_NEXT WOOM_CYCLE_END_DATE_PREV WOOM_CYCLE_LABEL WOOM_CYCLE_LABEL_NEXT WOOM_CYCLE_LABEL_PREV WOOM_CYCLE_TOKEN WOOM_CYCLE_TOKEN_NEXT WOOM_CYCLE_TOKEN_PREV WOOM_LOG_DIR WOOM_MEMBER WOOM_RUNDIR WOOM_SUBMISSION_DIR WOOM_TASK_NAME, [1] WOOM_TASK_PATH WOOM_WORKFLOW_DIR, [1], [2] ERROR (woom.job.JobStatus attribute) EXITING (woom.job.JobStatus attribute) export() (woom.tasks.Task method) export_scheduler_options() (woom.tasks.Task method) F FAILED (woom.job.JobStatus attribute) files (woom.job.Job property) (woom.job.ScheduledJob property) fill_templates() (woom.tasks.Task method) (woom.workflow.Workflow method) filter_as_env_str() (in module woom.render) filter_replicate_option() (in module woom.render) filter_strftime() (in module woom.render) FINISHED (woom.job.JobStatus attribute) flatten() (in module woom.util) floor() (woom.util.WoomDate method) fold (woom.util.WoomDate attribute) from_config_files() (woom.hosts.HostManager class method) (woom.tasks.TaskManager class method) from_scheduler() (woom.job.BackgroundJobManager static method) (woom.job.PbsproJobManager static method) (woom.job.SlurmJobManager static method) fromisocalendar() (woom.util.WoomDate class method) fromisoformat() (woom.util.WoomDate class method) fromkeys() (woom.context.Context class method) fromordinal() (woom.util.WoomDate class method) fromtimestamp() (woom.util.WoomDate class method) G gen_cycles() (in module woom.iters) gen_ensemble() (in module woom.iters) get() (woom.context.Context method) get_app_path() (woom.workflow.Workflow method) get_artifact_path() (woom.tasks.Task method) get_artifacts() (woom.tasks.Task method) (woom.workflow.Workflow method) get_cfgspecs() (in module woom.conf) get_command_args() (woom.job.BackgroundJobManager class method) (woom.job.PbsproJobManager class method) (woom.job.SlurmJobManager class method) get_context() (woom.workflow.Workflow method) get_cycle() (woom.workflow.Workflow method) get_env() (woom.hosts.Host method) get_env_vars() (woom.iters.Cycle method) get_host() (woom.hosts.HostManager method) get_jinja_filter() (in module woom.render) get_job() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) get_jobmanager() (woom.hosts.Host method) get_jobs() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) get_killed() (woom.job.PbsproJobManager static method) (woom.job.SlurmJobManager static method) get_member() (woom.workflow.Workflow method) get_overview() (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) get_overview_header() (woom.job.Job class method) (woom.job.ScheduledJob class method) get_params() (woom.hosts.Host method) (woom.iters.Cycle method) get_parser() (in module woom.cli) get_queue() (woom.hosts.Host method) get_run_dirs() (woom.workflow.Workflow method) get_source() (woom.render.WoomLoader method) get_status() (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) (woom.workflow.Workflow method) get_submission_command() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) get_submission_dirs() (woom.workflow.Workflow method) get_task() (woom.tasks.TaskManager method) (woom.workflow.Workflow method) get_task_artifact_paths() (woom.workflow.Workflow method) get_task_artifacts() (woom.workflow.Workflow method) get_task_cycle() (woom.workflow.Workflow method) get_task_items() (woom.workflow.Workflow method) get_task_member() (woom.workflow.Workflow method) get_task_members() (woom.workflow.Workflow method) get_task_path() (woom.workflow.Workflow method) get_task_run_dir() (woom.workflow.Workflow method) get_task_stage() (woom.tasks.TaskTree method) get_task_status() (woom.workflow.Workflow method) get_task_submission_dir() (woom.workflow.Workflow method) get_validator() (in module woom.conf) get_workflow() (in module woom.cli) get_workflow_cfg() (in module woom.cli) H has_been_canceled() (woom.job.JobStatus method) has_context() (woom.tasks.Task method) has_failed() (woom.job.JobStatus method) has_source_access (woom.render.WoomLoader attribute) has_vars() (woom.env.EnvConfig method) history_status_names (woom.job.SlurmJobManager attribute) horizon (woom.iters.Cycle attribute) Host (class in woom.hosts) host (woom.tasks.Task property) (woom.tasks.TaskManager property) (woom.workflow.Workflow property) HostError HostManager (class in woom.hosts) hour (woom.util.WoomDate attribute) I id (woom.iters.Member attribute) import_from_path() (in module woom.ext) INCLUDE_PATH infer_host() (woom.hosts.HostManager method) inherit_cfg() (in module woom.conf) INQUEUE (woom.job.JobStatus attribute) is_blocking (woom.tasks.Task property) is_datetime() (in module woom.conf) is_first (woom.iters.Cycle attribute) is_interval (woom.iters.Cycle attribute) is_last (woom.iters.Cycle attribute) is_leap_year (woom.util.WoomDate attribute) is_month_end (woom.util.WoomDate attribute) is_month_start (woom.util.WoomDate attribute) is_not_running() (woom.job.JobStatus method) is_pages() (in module woom.conf) is_path() (in module woom.conf) is_quarter_end (woom.util.WoomDate attribute) is_quarter_start (woom.util.WoomDate attribute) is_running() (woom.job.Job method) (woom.job.JobStatus method) (woom.job.ScheduledJob method) is_skipped (woom.tasks.Task property) is_task_blocking() (woom.workflow.Workflow method) is_task_skipped() (woom.workflow.Workflow method) is_timedelta() (in module woom.conf) is_unknown() (woom.job.JobStatus method) is_year_end (woom.util.WoomDate attribute) is_year_start (woom.util.WoomDate attribute) isocalendar() (woom.util.WoomDate method) isoformat() (woom.util.WoomDate method) isoweekday() (woom.util.WoomDate method) item_separator (woom.util.WoomJSONEncoder attribute) items() (woom.context.Context method) iterencode() (woom.util.WoomJSONEncoder method) J JINJA_ENV (in module woom.render) JINJA_FILTERS (in module woom.render) Job (class in woom.job) jobid (woom.job.JobStatus property) jobid_sep (woom.job.PbsproJobManager attribute) (woom.job.SlurmJobManager attribute) jobmanager (woom.workflow.Workflow property) JobStatus (class in woom.job) K keep_sections() (in module woom.conf) key_separator (woom.util.WoomJSONEncoder attribute) keys() (woom.context.Context method) kill() (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) (woom.workflow.Workflow method) KILLED (woom.job.JobStatus attribute) L label (woom.iters.Cycle attribute) (woom.iters.Member property) LIBRARY_PATH list_templates() (woom.render.WoomLoader method) load() (woom.job.BackgroundJobManager method) (woom.job.Job class method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob class method) (woom.job.SlurmJobManager method) (woom.render.WoomLoader method) load_artifacts_generators() (in module woom.ext) load_cfg() (in module woom.conf) load_config() (woom.hosts.HostManager method) (woom.tasks.TaskManager method) load_extensions() (in module woom.ext) load_jinja_filters() (in module woom.ext) load_job() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) load_validator_functions() (in module woom.ext) M main() (in module woom.cli) main_clean() (in module woom.cli) main_fill() (in module woom.cli) main_kill() (in module woom.cli) main_monitor() (in module woom.cli) main_run() (in module woom.cli) main_setup_logging() (in module woom.log) main_show_artifacts() (in module woom.cli) main_show_overview() (in module woom.cli) main_show_run_dirs() (in module woom.cli) main_show_status() (in module woom.cli) main_show_submission_dirs() (in module woom.cli) max (woom.util.WoomDate attribute) Member (class in woom.iters) member (woom.context.Context property) members (woom.workflow.Workflow property) merge_args_with_config() (in module woom.conf) microsecond (woom.util.WoomDate attribute) min (woom.util.WoomDate attribute) minute (woom.util.WoomDate attribute) module woom woom.cli woom.conf woom.context woom.env woom.ext woom.hosts woom.iters woom.job woom.log woom.render woom.tasks woom.util woom.workflow module_setup (woom.hosts.Host property) month (woom.util.WoomDate attribute) month_name() (woom.util.WoomDate method) N name (woom.hosts.Host property) (woom.tasks.Task property) nanosecond (woom.util.WoomDate attribute) next (woom.iters.Cycle attribute) nmembers (woom.iters.Member attribute) (woom.workflow.Workflow property) normalize() (woom.util.WoomDate method) NOTSUBMITTED (woom.job.JobStatus attribute) now() (woom.util.WoomDate class method) O output_directories (woom.workflow.Workflow attribute) overview_format (woom.job.Job attribute) (woom.job.ScheduledJob attribute) P pages2ints() (in module woom.util) params (woom.context.Context property) (woom.iters.Member property) PATH paths (woom.workflow.Workflow property) PbsproJobManager (class in woom.job) PENDING (woom.job.JobStatus attribute) pop() (woom.context.Context method) popitem() (woom.context.Context method) prepend_paths() (woom.env.EnvConfig method) prev (woom.iters.Cycle attribute) props (woom.iters.Member property) PYTHONPATH Q quarter (woom.util.WoomDate attribute) query_status() (woom.job.Job method) (woom.job.ScheduledJob method) queues (woom.hosts.Host property) R rank (woom.iters.Member property) re_match_since() (woom.util.WoomDate method) render() (in module woom.render) render_artifacts() (woom.tasks.Task method) render_content() (woom.tasks.Task method) replace() (woom.util.WoomDate method) resolution (woom.util.WoomDate attribute) round() (woom.util.WoomDate method) run() (woom.workflow.Workflow method) run_dir (woom.tasks.Task property) RUNNING (woom.job.JobStatus attribute) S ScheduledJob (class in woom.job) scheduler (woom.hosts.Host property) SCRATCH second (woom.util.WoomDate attribute) set_context() (woom.tasks.Task method) (woom.workflow.Workflow method) set_deep_item() (in module woom.util) set_paths() (woom.env.EnvConfig method) set_prop() (woom.iters.Member method) set_status() (woom.job.BackgroundJobManager method) (woom.job.Job method) (woom.job.PbsproJobManager method) (woom.job.ScheduledJob method) (woom.job.SlurmJobManager method) setdefault() (woom.context.Context method) setup_logger() (in module woom.cli) setup_logging() (in module woom.log) setup_template_loader() (in module woom.render) setup_workflow() (in module woom.cli) show_artifacts() (woom.workflow.Workflow method) show_overview() (woom.workflow.Workflow method) show_run_dirs() (woom.workflow.Workflow method) show_status() (woom.workflow.Workflow method) show_submission_dirs() (woom.workflow.Workflow method) SKIPPED (woom.job.JobStatus attribute) SlurmJobManager (class in woom.job) status_names (woom.job.BackgroundJobManager attribute) (woom.job.PbsproJobManager attribute) (woom.job.SlurmJobManager attribute) strftime() (woom.util.WoomDate method) strip_out_sections() (in module woom.conf) strptime() (woom.util.WoomDate class method) submission_dirs (woom.workflow.Workflow property) submit() (woom.job.BackgroundJobManager method) (woom.job.PbsproJobManager method) (woom.job.SlurmJobManager method) submit_sentinel() (woom.workflow.Workflow method) submit_task() (woom.workflow.Workflow method) submit_task_fake() (woom.workflow.Workflow method) SUCCESS (woom.job.JobStatus attribute) T Task (class in woom.tasks) task (woom.context.Context property) task_tree (woom.workflow.Workflow property) TaskError TaskManager (class in woom.tasks) taskmanager (woom.workflow.Workflow property) TaskTree (class in woom.tasks) terminate_blocking_jobs() (woom.workflow.Workflow method) TERMINATED (woom.job.JobStatus attribute) time() (woom.util.WoomDate method) timestamp() (woom.util.WoomDate method) timetuple() (woom.util.WoomDate method) timetz() (woom.util.WoomDate method) to_datetime64() (woom.util.WoomDate method) to_dict() (woom.job.Job method) (woom.job.ScheduledJob method) (woom.tasks.TaskTree method) to_json() (woom.context.Context method) to_json_entry() (woom.hosts.HostManager method) (woom.tasks.TaskManager method) (woom.workflow.Workflow method) to_julian_date() (woom.util.WoomDate method) to_numpy() (woom.util.WoomDate method) to_period() (woom.util.WoomDate method) to_pydatetime() (woom.util.WoomDate method) today() (woom.util.WoomDate class method) token (woom.iters.Cycle attribute) toordinal() (woom.util.WoomDate method) tz (woom.util.WoomDate property) tz_convert() (woom.util.WoomDate method) tz_localize() (woom.util.WoomDate method) tzinfo (woom.util.WoomDate property) tzname() (woom.util.WoomDate method) U unit (woom.util.WoomDate attribute) UNKNOWN (woom.job.JobStatus attribute) update() (woom.context.Context method) utcfromtimestamp() (woom.util.WoomDate class method) utcnow() (woom.util.WoomDate class method) utcoffset() (woom.util.WoomDate method) utctimetuple() (woom.util.WoomDate method) V VALIDATOR_FUNCTIONS (in module woom.conf) value (woom.util.WoomDate attribute) values() (woom.context.Context method) W wait() (woom.job.Job method) (woom.job.ScheduledJob method) week (woom.util.WoomDate attribute) weekday() (woom.util.WoomDate method) weekofyear (woom.util.WoomDate attribute) with_scheduler (woom.job.BackgroundJobManager attribute) (woom.job.PbsproJobManager attribute) (woom.job.SlurmJobManager attribute) woom module woom.cli module woom.conf module woom.context module woom.env module woom.ext module woom.hosts module woom.iters module woom.job module woom.log module woom.render module woom.tasks module woom.util module woom.workflow module WOOM_CYCLE WOOM_MEMBER WOOM_TASK_NAME woom_warn() (in module woom) WOOM_WORKFLOW_DIR, [1] WoomConfigError WoomDate (class in woom.util) WoomDeprecationWarning WoomError WoomJobError WoomJSONEncoder (class in woom.util) WoomLoader (class in woom.render) WoomWarning Workflow (class in woom.workflow) workflow (woom.context.Context property) workflow_dir (woom.workflow.Workflow property) WorkFlowError Y year (woom.util.WoomDate attribute)
